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Save dicom files in tree structure

Ronan Lefol requested to merge save_folder into develop

Initial implementation, to be debated.

This is more a tool to make things easy to work with as a human. In some cases all dicoms of all types may be in some random order/structure. This new method sorts them by study and series.

Current other ideas:

  • Make the root folder patient id
  • allow deletion of initial data (might get complicated given interaction with the rest of the class)

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